SPARQL query rewriting is a fundamental mechanism for uniformly querying heterogeneous ontologies in the Linked Data Web. However, the complexity of ontology alignments, particularly rich correspondences (c: c), makes this process challenging. Existing approaches primarily focus on simple (s: s) and par tially complex (s: c) alignments, thereby overlooking the challenges posed by more expressive alignments. Moreover, the intricate syntax of SPARQL presents a barrier for non - expert users seeking to fully exploit the knowledge encapsulated in ontologies. T his article proposes an innovative approach for the automatic rewriting of SPARQL queries from a source ontology to a target ontology, based on a user's need expressed in natural language. It leverages the principles of equivalence transitivity as well as the advanced capabilities of large language models such as GPT - 4 . By integrating these elements, this approach stands out for its ability to efficiently handle complex alignments, particularly (c: c) correspondences, by fully exploiting their expressivene ss. Additionally, it facilitates access to aligned ontologies for users unfamiliar with SPARQL, providing a flexible solution for querying heterogeneous data. I n the Linked Data Web, aligned ontologies play a crucial role in facilitating interoperability between different data sources.

In the fast-moving world of AI, as organizations and researchers develop more advanced models, they face challenges due to their sheer size and computational demands. Deploying such models on edge devices or in resource-constrained environments adds further challenges related to energy consumption, memory usage and latency. To address these challenges, emerging trends are shaping the future of efficient model optimization techniques. From this premise, by employing supervised state-of-the-art transformer-based models, this research introduces a systematic method for ontology alignment, grounded in cosine-based semantic similarity between a biomedical layman vocabulary and the Unified Medical Language System (UMLS) Metathesaurus. It leverages Microsoft Olive to search for target optimizations among different Execution Providers (EPs) using the ONNX Runtime backend, followed by an assembled process of dynamic quantization employing Intel Neural Compressor and IPEX (Intel Extension for PyTorch). Through our optimization process, we conduct extensive assessments on the two tasks from the DEFT 2020 Evaluation Campaign, achieving a new state-of-the-art in both. We retain performance metrics intact, while attaining an average inference speed-up of 20x and reducing memory usage by approximately 70%.

This paper presents our system, Homa, for SemEval-2025 Task 5: Subject Tagging, which focuses on automatically assigning subject labels to technical records from TIBKAT using the Gemeinsame Normdatei (GND) taxonomy. We leverage OntoAligner, a modular ontology alignment toolkit, to address this task by integrating retrieval-augmented generation (RAG) techniques. Our approach formulates the subject tagging problem as an alignment task, where records are matched to GND categories based on semantic similarity. We evaluate OntoAligner's adaptability for subject indexing and analyze its effectiveness in handling multilingual records. Experimental results demonstrate the strengths and limitations of this method, highlighting the potential of alignment techniques for improving subject tagging in digital libraries.

Ontology Alignment (OA) is fundamental for achieving semantic interoperability across diverse knowledge systems. We present OntoAligner, a comprehensive, modular, and robust Python toolkit for ontology alignment, designed to address current limitations with existing tools faced by practitioners. Existing tools are limited in scalability, modularity, and ease of integration with recent AI advances. OntoAligner provides a flexible architecture integrating existing lightweight OA techniques such as fuzzy matching but goes beyond by supporting contemporary methods with retrieval-augmented generation and large language models for OA. The framework prioritizes extensibility, enabling researchers to integrate custom alignment algorithms and datasets. This paper details the design principles, architecture, and implementation of the OntoAligner, demonstrating its utility through benchmarks on standard OA tasks. Our evaluation highlights OntoAligner's ability to handle large-scale ontologies efficiently with few lines of code while delivering high alignment quality. By making OntoAligner open-source, we aim to provide a resource that fosters innovation and collaboration within the OA community, empowering researchers and practitioners with a toolkit for reproducible OA research and real-world applications.

This paper proposes a novel approach to semantic ontology alignment using contextual descriptors. A formalization was developed that enables the integration of essential and contextual descriptors to create a comprehensive knowledge model. The hierarchical structure of the semantic approach and the mathematical apparatus for analyzing potential conflicts between concepts, particularly in the example of "Transparency" and "Privacy" in the context of artificial intelligence, are demonstrated. Experimental studies showed a significant improvement in ontology alignment metrics after the implementation of contextual descriptors, especially in the areas of privacy, responsibility, and freedom & autonomy. The application of contextual descriptors achieved an average overall improvement of approximately 4.36%. The results indicate the effectiveness of the proposed approach for more accurately reflecting the complexity of knowledge and its contextual dependence.

This work investigates the applicability of recent generative Large Language Models (LLMs), such as the GPT series and Flan-T5, to ontology alignment for identifying concept equivalence mappings across ontologies. To test the zero-shot performance of Flan-T5-XXL and GPT-3.5-turbo, we leverage challenging subsets from two equivalence matching datasets of the OAEI Bio-ML track, taking into account concept labels and structural contexts. Preliminary findings suggest that LLMs have the potential to outperform existing ontology alignment systems like BERTMap, given careful framework and prompt design.

Ontology alignment process is overwhelmingly cited in Knowledge Engineering as a key mechanism aimed at bypassing heterogeneity and reconciling various data sources, represented by ontologies, i.e., the the Semantic Web cornerstone. In such infrastructures and environments, it is inconceivable to assume that all ontologies covering a particular domain of knowledge are aligned in pairs. Moreover, the high performance of alignment approaches is closely related to two factors, i.e., time consumption and machine resource limitations. Thus, good quality alignments are valuable and it would be appropriate to exploit them. Based on this observation, this article introduces a new method of indirect alignment of ontologies in a cross-lingual context. Indeed, the proposed method deals with alignments of multilingual ontologies and implements an indirect ontology alignment strategy based on a composition and reuse of effective direct alignments. The trigger of the proposed method process is based on alignment algebra which governs the semantics composition of relationships and confidence values. The obtained results, after a thorough and detailed experiment are very encouraging and highlight many positive aspects about the new proposed method.

Ontology Alignment is an important research problem that finds application in various fields such as data integration, data transfer, data preparation etc. State-of-the-art (SOTA) architectures in Ontology Alignment typically use naive domain-dependent approaches with handcrafted rules and manually assigned values, making them unscalable and inefficient. Deep Learning approaches for ontology alignment use domain-specific architectures that are not only in-extensible to other datasets and domains, but also typically perform worse than rule-based approaches due to various limitations including over-fitting of models, sparsity of datasets etc. In this work, we propose VeeAlign, a Deep Learning based model that uses a dual-attention mechanism to compute the contextualized representation of a concept in order to learn alignments. By doing so, not only does our approach exploit both syntactic and semantic structure of ontologies, it is also, by design, flexible and scalable to different domains with minimal effort. We validate our approach on various datasets from different domains and in multilingual settings, and show its superior performance over SOTA methods.

Typically an ontology matching technique is a combination of much different type of matchers operating at various abstraction levels such as structure, semantic, syntax, instance etc. An ontology matching technique which employs matchers at all possible abstraction levels is expected to give, in general, best results in terms of precision, recall and F-measure due to improvement in matching opportunities and if we discount efficiency issues which may improve with better computing resources such as parallel processing. A gold standard ontology matching model is derived from a model classification of ontology matching techniques. A suitable metric is also defined based on gold standard ontology matching model. A review of various ontology matching techniques specified in recent research papers in the area was undertaken to categorize an ontology matching technique as per newly proposed gold standard model and a metric value for the whole group was computed. The results of the above study support proposed gold standard ontology matching model.

In domains such as biomedicine, ontologies are prominently utilized for annotating data. Consequently, aligning ontologies facilitates integrating data. Several algorithms exist for automatically aligning ontologies with diverse levels of performance. As alignment applications evolve and exhibit online run time constraints, performing the alignment in a reasonable amount of time without compromising the quality of the alignment is a crucial challenge. A large class of alignment algorithms is iterative and often consumes more time than others in delivering solutions of high quality. We present a novel and general approach for speeding up the multivariable optimization process utilized by these algorithms. Specifically, we use the technique of block-coordinate descent (BCD), which exploits the subdimensions of the alignment problem identified using a partitioning scheme. We integrate this approach into multiple well-known alignment algorithms and show that the enhanced algorithms generate similar or improved alignments in significantly less time on a comprehensive testbed of ontology pairs. Because BCD does not overly constrain how we partition or order the parts, we vary the partitioning and ordering schemes in order to empirically determine the best schemes for each of the selected algorithms. As biomedicine represents a key application domain for ontologies, we introduce a comprehensive biomedical ontology testbed for the community in order to evaluate alignment algorithms. Because biomedical ontologies tend to be large, default iterative techniques find it difficult to produce a good quality alignment within a reasonable amount of time. We align a significant number of ontology pairs from this testbed using BCD-enhanced algorithms. Our contributions represent an important step toward making a significant class of alignment techniques computationally feasible.